PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_178646g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family RAV
Protein Properties Length: 553aa    MW: 61003.4 Da    PI: 8.459
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_178646g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.9e-12196244155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+ykGV   + +grW ++I++      ++r++lg+f  +e+Aa+a+++a+ k++g
  MA_178646g0010 196 SQYKGVVPQP-NGRWGSQIYEK-----HQRVWLGTFNREEDAARAYDRAAIKFRG 244
                     78****9888.8*********3.....5************************998 PP

2B3102.81.9e-323104151100
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+ tpsdv+k++rlv+pk++ae++       gg+k +++ l++ed + ++W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ s
  MA_178646g0010 310 FDKTVTPSDVGKLNRLVIPKQHAEKYfpldvasGGSKGKGVLLSFEDGTDKTWRFRYSYWNSSQSYVLTKGWSRYVKEKRLQAGDIVTFERIS-S 403
                     89*******************************9999*****************************************************998.8 PP

                     EE..EEEEE-SS CS
              B3  89 efelvvkvfrks 100
                     +++l+++++r+s
  MA_178646g0010 404 SRHLFISFRRRS 415
                     888999999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-17196252IPR016177DNA-binding domain
CDDcd000183.63E-14196251No hitNo description
PfamPF008478.6E-7197244IPR001471AP2/ERF domain
SMARTSM003801.7E-28197258IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-21197252IPR001471AP2/ERF domain
PROSITE profilePS5103219.625197252IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.9E-40302416IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.36E-33305418IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-29308413No hitNo description
PROSITE profilePS5086314.226310415IPR003340B3 DNA binding domain
SMARTSM010193.4E-26310415IPR003340B3 DNA binding domain
PfamPF023627.9E-30310414IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MQWTRTVMSL SQVIMTSSRR PRCMGQSVCS INPESSFLLN FVIASELQWH FSRPENMSAS  60
VVAVPVQAAL CNLLKAVGND NCDMGLRLGR CYSPLKEESS SNSREPSSNS TAVCRKKAMG  120
ADSTRTDNEE AGSVIENDSN SSPAPAGKSV CSNSSSFADR EGLERMGSGI SAVSFENTNI  180
PSAQGEENSC KRLPSSQYKG VVPQPNGRWG SQIYEKHQRV WLGTFNREED AARAYDRAAI  240
KFRGGDAITN FNFVDSHPEA VFLRGHSKYE IVDMLRKHTY DEELDQNKSS SHINPEVARS  300
NPLEPREHLF DKTVTPSDVG KLNRLVIPKQ HAEKYFPLDV ASGGSKGKGV LLSFEDGTDK  360
TWRFRYSYWN SSQSYVLTKG WSRYVKEKRL QAGDIVTFER ISSSRHLFIS FRRRSCGFLP  420
PAAPLPKLCP QSVDPLAVTG YPHWAQFFYA APPLMNAVAE CSIPGRASPD SLYFHDSKAL  480
EPTASYDGNP SSLVFVNLER TSLSTDGGSL SSSSVRLFGV NLQRSPLNLF PGSAVEEDVT  540
GNTKKRKAAA LPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4230742411127DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QRH51e-132A0A0D6QRH5_ARACU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-90related to ABI3/VP1 2